PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g13180
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 203aa    MW: 22692.9 Da    PI: 5.205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g13180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  CA06g13180 33 YTCTFCRREFRSAQALGGHMNVH 55
                9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-63060No hitNo description
PfamPF139121.9E-53356IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8243360IPR007087Zinc finger, C2H2
SMARTSM003550.00663355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MWNPKDDDDS WEVRAFEEDT SNAMGATWPP RFYTCTFCRR EFRSAQALGG HMNVHRRDRV  60
RLNQPPSFAS NSSLTFPNNV NSNFLVQNQE FIPNGGLCLV YSMPNYNPNA IFNPTTIKSS  120
VDPSNLLSNI SPFLTNNLMS PCIPPSSNFQ PNNINSSSFN TSEPSASNSN SNDNNHDKRD  180
SIIGDDIDLE LRLGWRSATP PR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-122855229superman protein
2l1o_A1e-122855229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-167HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577066.11e-146PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0ZPS81e-111M0ZPS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000053761e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-30C2H2 family protein